HL_4D67_073
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UGAAUUGCAGGACACAUUGA
- Length
- 20 nucleotides
- Bulged bases
- 4D67|1|3|C|83, 4D67|1|3|U|85
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4D67_073 not in the Motif Atlas
- Homologous match to HL_8C3A_230
- Geometric discrepancy: 0.2945
- The information below is about HL_8C3A_230
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
4D67|1|3|U|69
4D67|1|3|G|70
4D67|1|3|A|71
4D67|1|3|A|72
4D67|1|3|U|73
4D67|1|3|U|74
4D67|1|3|G|75
4D67|1|3|C|76
4D67|1|3|A|77
4D67|1|3|G|78
4D67|1|3|G|79
4D67|1|3|A|80
4D67|1|3|C|81
4D67|1|3|A|82
4D67|1|3|C|83
4D67|1|3|A|84
4D67|1|3|U|85
4D67|1|3|U|86
4D67|1|3|G|87
4D67|1|3|A|88
Current chains
- Chain 3
- 5.8S RRNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y
- 60S RIBOSOMAL PROTEIN L26
- Chain h
- 60S RIBOSOMAL PROTEIN L35
- Chain j
- 60S RIBOSOMAL PROTEIN L37
- Chain l
- 60S RIBOSOMAL PROTEIN L39
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