HL_4D67_074

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

ACUU

Length

4 nucleotides

Bulged bases

4D67|1|3|U|110

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D67_074 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.2477

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4D67|1|3|A|108
4D67|1|3|C|109
4D67|1|3|U|110
4D67|1|3|U|111

Current chains

Chain 3

5.8S RRNA

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA

Chain X

60S RIBOSOMAL PROTEIN L23A

Chain j

60S RIBOSOMAL PROTEIN L37

Chain l

60S RIBOSOMAL PROTEIN L39