HL_4D67_079
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CUUGGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- 4D67|1|2|G|283, 4D67|1|2|G|284, 4D67|1|2|A|286
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4D67_079 not in the Motif Atlas
- Homologous match to HL_8P9A_120
- Geometric discrepancy: 0.3122
- The information below is about HL_8P9A_120
- Detailed Annotation
- T-loop related
- Broad Annotation
- T-loop
- Motif group
- HL_77436.5
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
4D67|1|2|C|280
4D67|1|2|U|281
4D67|1|2|U|282
4D67|1|2|G|283
4D67|1|2|G|284
4D67|1|2|G|285
4D67|1|2|A|286
4D67|1|2|A|287
4D67|1|2|U|288
4D67|1|2|G|289
Current chains
- Chain 2
- 28S RRNA
Nearby chains
- Chain L
- 60S RIBOSOMAL PROTEIN L13
- Chain N
- 60S RIBOSOMAL PROTEIN L15
- Chain a
- 60S RIBOSOMAL PROTEIN L27A
- Chain o
- 60S RIBOSOMAL PROTEIN L36A
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