HL_4D67_086

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

4D67|1|2|G|2398, 4D67|1|2|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D67_086 not in the Motif Atlas

Homologous match to HL_8P9A_144

Geometric discrepancy: 0.3297

The information below is about HL_8P9A_144

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

4D67|1|2|A|2397
4D67|1|2|G|2398
4D67|1|2|C|2399
4D67|1|2|A|2400
4D67|1|2|G|2401
4D67|1|2|U|2402
4D67|1|2|U|2403

Current chains

Chain 2

28S RRNA

Nearby chains

Chain P

60S RIBOSOMAL PROTEIN L17

Chain R

60S RIBOSOMAL PROTEIN L19

Chain l

60S RIBOSOMAL PROTEIN L39