HL_4DR6_015

3D structure

PDB id

4DR6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position and streptomycin bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DR6_015 not in the Motif Atlas

Homologous match to HL_4LFB_015

Geometric discrepancy: 0.0481

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4DR6|1|A|C|689
4DR6|1|A|G|690
4DR6|1|A|G|691
4DR6|1|A|U|692
4DR6|1|A|G|693
4DR6|1|A|A|694
4DR6|1|A|A|695
4DR6|1|A|A|696
4DR6|1|A|U|697
4DR6|1|A|G|698

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain K

30S ribosomal protein S11