HL_4DS6_009

3D structure

PDB id

4DS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a group II intron in the pre-catalytic state

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CGAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DS6_009 not in the Motif Atlas

Geometric match to HL_3IGI_009

Geometric discrepancy: 0.1004

The information below is about HL_3IGI_009

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_64036.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

27

Unit IDs

4DS6|1|A|C|368
4DS6|1|A|G|369
4DS6|1|A|A|370
4DS6|1|A|A|371
4DS6|1|A|C|372
4DS6|1|A|G|373

Current chains

Chain A

Mutant Group IIC Intron

Nearby chains