HL_4DUY_015

3D structure

PDB id

4DUY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DUY_015 not in the Motif Atlas

Homologous match to HL_4LFB_015

Geometric discrepancy: 0.0618

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4DUY|1|A|C|689
4DUY|1|A|G|690
4DUY|1|A|G|691
4DUY|1|A|U|692
4DUY|1|A|G|693
4DUY|1|A|A|694
4DUY|1|A|A|695
4DUY|1|A|A|696
4DUY|1|A|U|697
4DUY|1|A|G|698

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

ribosomal protein S7

Chain K

ribosomal protein S11