HL_4DV2_017

3D structure

PDB id

4DV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

4DV2|1|A|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DV2_017 not in the Motif Atlas

Homologous match to HL_4LFB_017

Geometric discrepancy: 0.1458

The information below is about HL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4DV2|1|A|G|786
4DV2|1|A|A|787
4DV2|1|A|U|788
4DV2|1|A|U|789
4DV2|1|A|A|790
4DV2|1|A|G|791
4DV2|1|A|A|792
4DV2|1|A|U|793
4DV2|1|A|A|794
4DV2|1|A|C|795
4DV2|1|A|C|796

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

ribosomal protein S11