HL_4E8T_009

3D structure

PDB id

4E8T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset)

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

CGAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4E8T_009 not in the Motif Atlas

Geometric match to HL_3IGI_009

Geometric discrepancy: 0.0739

The information below is about HL_3IGI_009

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_64036.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

27

Unit IDs

4E8T|1|A|C|368
4E8T|1|A|G|369
4E8T|1|A|A|370
4E8T|1|A|A|371
4E8T|1|A|C|372
4E8T|1|A|G|373

Current chains

Chain A

Group IIC intron

Nearby chains

Chain B

5'-R(*AP*UP*UP*UP*AP*UP*UP*A)-3'