HL_4GKK_021

3D structure

PDB id

4GKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAAGCAACGC

Length

10 nucleotides

Bulged bases

4GKK|1|A|G|948

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4GKK_021 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.0979

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4GKK|1|A|G|940
4GKK|1|A|A|941
4GKK|1|A|A|942
4GKK|1|A|G|943
4GKK|1|A|C|944
4GKK|1|A|A|945
4GKK|1|A|A|946
4GKK|1|A|C|947
4GKK|1|A|G|948
4GKK|1|A|C|949

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10

Chain M

30S ribosomal protein S13