3D structure

PDB id
4GKK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GAAGCAACGC
Length
10 nucleotides
Bulged bases
4GKK|1|A|G|948
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4GKK_021 not in the Motif Atlas
Homologous match to HL_4LFB_021
Geometric discrepancy: 0.0979
The information below is about HL_4LFB_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50779.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4GKK|1|A|G|940
4GKK|1|A|A|941
4GKK|1|A|A|942
4GKK|1|A|G|943
4GKK|1|A|C|944
4GKK|1|A|A|945
4GKK|1|A|A|946
4GKK|1|A|C|947
4GKK|1|A|G|948
4GKK|1|A|C|949

Current chains

Chain A
16S rRNA

Nearby chains

Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain M
30S ribosomal protein S13

Coloring options:


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