HL_4IO9_016
3D structure
- PDB id
- 4IO9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CCUUAUGCG
- Length
- 9 nucleotides
- Bulged bases
- 4IO9|1|X|U|554, 4IO9|1|X|U|555, 4IO9|1|X|A|556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4IO9_016 not in the Motif Atlas
- Geometric match to HL_6VMY_004
- Geometric discrepancy: 0.2349
- The information below is about HL_6VMY_004
- Detailed Annotation
- UNCG variation
- Broad Annotation
- UNCG variation
- Motif group
- HL_51020.2
- Basepair signature
- cWW-cSW-F
- Number of instances in this motif group
- 14
Unit IDs
4IO9|1|X|C|552
4IO9|1|X|C|553
4IO9|1|X|U|554
4IO9|1|X|U|555
4IO9|1|X|A|556
4IO9|1|X|U|557
4IO9|1|X|G|558
4IO9|1|X|C|559
4IO9|1|X|G|560
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain N
- 50S ribosomal protein L20
- Chain O
- 50S ribosomal protein L21
Coloring options: