HL_4IO9_044
3D structure
- PDB id
- 4IO9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUUACCAAAAUC
- Length
- 13 nucleotides
- Bulged bases
- 4IO9|1|X|A|1771, 4IO9|1|X|C|1772, 4IO9|1|X|C|1773, 4IO9|1|X|A|1777
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4IO9_044 not in the Motif Atlas
- Homologous match to HL_7A0S_045
- Geometric discrepancy: 0.1104
- The information below is about HL_7A0S_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50951.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4IO9|1|X|G|1767
4IO9|1|X|U|1768
4IO9|1|X|U|1769
4IO9|1|X|U|1770
4IO9|1|X|A|1771
4IO9|1|X|C|1772
4IO9|1|X|C|1773
4IO9|1|X|A|1774
4IO9|1|X|A|1775
4IO9|1|X|A|1776
4IO9|1|X|A|1777
4IO9|1|X|U|1778
4IO9|1|X|C|1779
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain A
- 50S ribosomal protein L2
Coloring options: