HL_4IO9_059
3D structure
- PDB id
- 4IO9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UGAAGAAG
- Length
- 8 nucleotides
- Bulged bases
- 4IO9|1|X|G|2508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4IO9_059 not in the Motif Atlas
- Homologous match to HL_7A0S_060
- Geometric discrepancy: 0.0848
- The information below is about HL_7A0S_060
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_46665.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
4IO9|1|X|U|2507
4IO9|1|X|G|2508
4IO9|1|X|A|2509
4IO9|1|X|A|2510
4IO9|1|X|G|2511
4IO9|1|X|A|2512
4IO9|1|X|A|2513
4IO9|1|X|G|2514
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain E
- 50S ribosomal protein L6
Coloring options: