#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7 81-82-7
1 HL_5TBW_0705TBW0.544611 LSU rRNAG3303A3305U3306A3307C3308G3309A3310C3311cWWcSW
2 HL_5J7L_2015J7L0.41131DA LSU rRNAG2819A2821G2822A2823C2824G2825A2826C2827cWWcSW
3 HL_4V9F_0694V9F0.476710 LSU rRNAG2836A2838C2839A2840A2841G2842A2843C2844cWWcSW
4 HL_4Y4O_1714Y4O0.146312A LSU rRNAG2819A2821G2822A2823C2824C2825A2826C2827cWWcSW
5 HL_4IOA_0674IOA0.00001X LSU rRNAG2794A2796G2797A2798C2799C2800A2801C2802cWWcSW
6 HL_4WF9_0644WF90.11111X LSU rRNAA2839A2841G2842A2843U2844G2845A2846U2847cWWcSW

3D structures

Complete motif including flanking bases
SequenceCounts
GAAGACCAC2
GUAUACGAC1
GAAGACGAC1
GUACAAGAC1
AAAGAUGAU1
Non-Watson-Crick part of the motif
SequenceCounts
AAGACCA2
UAUACGA1
AAGACGA1
UACAAGA1
AAGAUGA1

Release history

Release3.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.47
Date2018-11-162018-12-142019-01-112019-02-082019-03-082019-04-052019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-21
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (6)
  • Basepair signature
    cWW-cSW-R-R-R-R
    Heat map statistics
    Min 0.11 | Avg 0.33 | Max 0.56
    Help

    Coloring options:

    HL_5TBW_070:HL_5TBW_070 = 0HL_5TBW_070:HL_5J7L_201 = 0.4107HL_5TBW_070:HL_4V9F_069 = 0.4621HL_5TBW_070:HL_4Y4O_171 = 0.5574HL_5TBW_070:HL_4IOA_067 = 0.5446HL_5TBW_070:HL_4WF9_064 = 0.5589HL_5J7L_201:HL_5TBW_070 = 0.4107HL_5J7L_201:HL_5J7L_201 = 0HL_5J7L_201:HL_4V9F_069 = 0.335HL_5J7L_201:HL_4Y4O_171 = 0.4079HL_5J7L_201:HL_4IOA_067 = 0.4113HL_5J7L_201:HL_4WF9_064 = 0.4019HL_4V9F_069:HL_5TBW_070 = 0.4621HL_4V9F_069:HL_5J7L_201 = 0.335HL_4V9F_069:HL_4V9F_069 = 0HL_4V9F_069:HL_4Y4O_171 = 0.4483HL_4V9F_069:HL_4IOA_067 = 0.4767HL_4V9F_069:HL_4WF9_064 = 0.5127HL_4Y4O_171:HL_5TBW_070 = 0.5574HL_4Y4O_171:HL_5J7L_201 = 0.4079HL_4Y4O_171:HL_4V9F_069 = 0.4483HL_4Y4O_171:HL_4Y4O_171 = 0HL_4Y4O_171:HL_4IOA_067 = 0.1463HL_4Y4O_171:HL_4WF9_064 = 0.1527HL_4IOA_067:HL_5TBW_070 = 0.5446HL_4IOA_067:HL_5J7L_201 = 0.4113HL_4IOA_067:HL_4V9F_069 = 0.4767HL_4IOA_067:HL_4Y4O_171 = 0.1463HL_4IOA_067:HL_4IOA_067 = 0HL_4IOA_067:HL_4WF9_064 = 0.1111HL_4WF9_064:HL_5TBW_070 = 0.5589HL_4WF9_064:HL_5J7L_201 = 0.4019HL_4WF9_064:HL_4V9F_069 = 0.5127HL_4WF9_064:HL_4Y4O_171 = 0.1527HL_4WF9_064:HL_4IOA_067 = 0.1111HL_4WF9_064:HL_4WF9_064 = 0HL_5TBW_070HL_5J7L_201HL_4V9F_069HL_4Y4O_171HL_4IOA_067HL_4WF9_064Discrepancy0.000.100.200.300.400.50
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