HL_4JI5_015

3D structure

PDB id

4JI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4JI5_015 not in the Motif Atlas

Homologous match to HL_4LFB_015

Geometric discrepancy: 0.0944

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

4JI5|1|A|C|689
4JI5|1|A|G|690
4JI5|1|A|G|691
4JI5|1|A|U|692
4JI5|1|A|G|693
4JI5|1|A|A|694
4JI5|1|A|A|695
4JI5|1|A|A|696
4JI5|1|A|U|697
4JI5|1|A|G|698

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

RIBOSOMAL PROTEIN S7

Chain K

RIBOSOMAL PROTEIN S11