HL_4JI7_015

3D structure

PDB id

4JI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4JI7_015 not in the Motif Atlas

Homologous match to HL_4LFB_015

Geometric discrepancy: 0.0618

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

4JI7|1|A|C|689
4JI7|1|A|G|690
4JI7|1|A|G|691
4JI7|1|A|U|692
4JI7|1|A|G|693
4JI7|1|A|A|694
4JI7|1|A|A|695
4JI7|1|A|A|696
4JI7|1|A|U|697
4JI7|1|A|G|698

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

RIBOSOMAL PROTEIN S7

Chain K

RIBOSOMAL PROTEIN S11