HL_4JV5_006

3D structure

PDB id

4JV5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structures of pseudouridinilated stop codons with ASLs

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4JV5|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4JV5_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0642

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4JV5|1|A|G|259
4JV5|1|A|G|260
4JV5|1|A|U|261
4JV5|1|A|A|262
4JV5|1|A|A|263
4JV5|1|A|U|264
4JV5|1|A|G|265
4JV5|1|A|G|266
4JV5|1|A|C|267

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein 20