HL_4KHP_017
3D structure
- PDB id
- 4KHP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 4KHP|1|A|U|777
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4KHP_017 not in the Motif Atlas
- Homologous match to HL_4LFB_017
- Geometric discrepancy: 0.0613
- The information below is about HL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
4KHP|1|A|G|770
4KHP|1|A|A|771
4KHP|1|A|U|772
4KHP|1|A|U|773
4KHP|1|A|A|774
4KHP|1|A|G|775
4KHP|1|A|A|776
4KHP|1|A|U|777
4KHP|1|A|A|778
4KHP|1|A|C|779
4KHP|1|A|C|780
Current chains
- Chain A
- 16S Ribosomal RNA
Nearby chains
- Chain K
- 30S Ribosomal protein S11
- Chain X
- Fragment of messenger RNA
Coloring options: