HL_4KZX_006

3D structure

PDB id

4KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with eIF1.

Experimental method

X-RAY DIFFRACTION

Resolution

7.81 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

4KZX|1|i|U|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4KZX_006 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.2001

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4KZX|1|i|G|279
4KZX|1|i|G|280
4KZX|1|i|U|281
4KZX|1|i|G|282
4KZX|1|i|A|283
4KZX|1|i|C|284
4KZX|1|i|U|285
4KZX|1|i|C|286

Current chains

Chain i

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4X

Chain G

40S ribosomal protein S6

Chain L

40S ribosomal protein S11