HL_4KZX_026

3D structure

PDB id

4KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with eIF1.

Experimental method

X-RAY DIFFRACTION

Resolution

7.81 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

4KZX|1|i|A|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4KZX_026 not in the Motif Atlas

Homologous match to HL_4V88_212

Geometric discrepancy: 0.2054

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4KZX|1|i|G|1241
4KZX|1|i|A|1242
4KZX|1|i|C|1243
4KZX|1|i|U|1244
4KZX|1|i|C|1245
4KZX|1|i|A|1246
4KZX|1|i|A|1247
4KZX|1|i|C|1248
4KZX|1|i|A|1249
4KZX|1|i|C|1250

Current chains

Chain i

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S16

Chain U

40S ribosomal protein S20

Chain d

40S ribosomal protein S29