HL_4KZY_006

3D structure

PDB id

4KZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A.

Experimental method

X-RAY DIFFRACTION

Resolution

7.01 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

4KZY|1|i|U|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4KZY_006 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.2002

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4KZY|1|i|G|279
4KZY|1|i|G|280
4KZY|1|i|U|281
4KZY|1|i|G|282
4KZY|1|i|A|283
4KZY|1|i|C|284
4KZY|1|i|U|285
4KZY|1|i|C|286

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain E

40S Ribosomal Protein S4X

Chain G

40S Ribosomal Protein S6

Chain L

40S Ribosomal Protein S11