HL_4KZY_026

3D structure

PDB id

4KZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A.

Experimental method

X-RAY DIFFRACTION

Resolution

7.01 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

4KZY|1|i|U|1296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4KZY_026 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2864

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

4KZY|1|i|A|1291
4KZY|1|i|U|1292
4KZY|1|i|U|1293
4KZY|1|i|G|1294
4KZY|1|i|A|1295
4KZY|1|i|U|1296
4KZY|1|i|A|1297
4KZY|1|i|G|1298
4KZY|1|i|C|1299
4KZY|1|i|U|1300

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain P

40S Ribosomal Protein S15

Chain d

40S Ribosomal Protein S29

Chain f

40S Ribosomal Protein S27A