HL_4KZZ_004

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

CCUUUGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4KZZ_004 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3769

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4KZZ|1|i|C|194
4KZZ|1|i|C|195
4KZZ|1|i|U|196
4KZZ|1|i|U|197
4KZZ|1|i|U|198
4KZZ|1|i|G|199
4KZZ|1|i|U|200
4KZZ|1|i|G|201

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain I

40S Ribosomal Protein S8