HL_4KZZ_019
3D structure
- PDB id
- 4KZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 7.03 Å
Loop
- Sequence
- UAUUUUGUUGGUUUUCG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4KZZ_019 not in the Motif Atlas
- Homologous match to HL_4V88_205
- Geometric discrepancy: 0.4322
- The information below is about HL_4V88_205
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_88364.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
4KZZ|1|i|U|881
4KZZ|1|i|A|882
4KZZ|1|i|U|883
4KZZ|1|i|U|884
4KZZ|1|i|U|885
4KZZ|1|i|U|886
4KZZ|1|i|G|887
4KZZ|1|i|U|888
4KZZ|1|i|U|889
4KZZ|1|i|G|890
4KZZ|1|i|G|891
4KZZ|1|i|U|892
4KZZ|1|i|U|893
4KZZ|1|i|U|894
4KZZ|1|i|U|895
4KZZ|1|i|C|896
4KZZ|1|i|G|897
Current chains
- Chain i
- 18S Ribosomal RNA
Nearby chains
- Chain G
- 40S Ribosomal Protein S6
- Chain L
- 40S Ribosomal Protein S11
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