HL_4KZZ_029

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

4KZZ|1|i|U|1367

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4KZZ_029 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.1971

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4KZZ|1|i|G|1362
4KZZ|1|i|U|1363
4KZZ|1|i|U|1364
4KZZ|1|i|A|1365
4KZZ|1|i|A|1366
4KZZ|1|i|U|1367
4KZZ|1|i|U|1368
4KZZ|1|i|C|1369

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain R

40S Ribosomal Protein S17