3D structure

PDB id
4L47 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.22 Å

Loop

Sequence
GUUCGG(1MG)GAC
Length
10 nucleotides
Bulged bases
4L47|1|XY|U|33
QA status
Modified nucleotides: 1MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4L47_144 not in the Motif Atlas
Geometric match to HL_3MJA_001
Geometric discrepancy: 0.3023
The information below is about HL_3MJA_001
Detailed Annotation
Anticodon loop related
Broad Annotation
Anticodon loop related
Motif group
HL_41019.2
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

4L47|1|XY|G|31
4L47|1|XY|U|32
4L47|1|XY|U|33
4L47|1|XY|C|34
4L47|1|XY|G|35
4L47|1|XY|G|36
4L47|1|XY|1MG|37
4L47|1|XY|G|37|||A
4L47|1|XY|A|38
4L47|1|XY|C|39

Current chains

Chain XY
messenger RNA

Nearby chains

Chain XA
Small subunit ribosomal RNA; SSU rRNA
Chain XL
30S ribosomal protein S12
Chain XM
30S ribosomal protein S13
Chain XX
A-site ASL SufA6
Chain YA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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