HL_4LF5_017

3D structure

PDB id

4LF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4LF5_017 not in the Motif Atlas

Homologous match to HL_4LFB_017

Geometric discrepancy: 0.1293

The information below is about HL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4LF5|1|A|G|786
4LF5|1|A|A|787
4LF5|1|A|U|788
4LF5|1|A|U|789
4LF5|1|A|A|790
4LF5|1|A|G|791
4LF5|1|A|A|792
4LF5|1|A|U|793
4LF5|1|A|A|794
4LF5|1|A|C|795
4LF5|1|A|C|796

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

ribosomal protein S11