HL_4LFA_017

3D structure

PDB id

4LFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

4LFA|1|A|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4LFA_017 not in the Motif Atlas

Homologous match to HL_4LFB_017

Geometric discrepancy: 0.0643

The information below is about HL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4LFA|1|A|G|786
4LFA|1|A|A|787
4LFA|1|A|U|788
4LFA|1|A|U|789
4LFA|1|A|A|790
4LFA|1|A|G|791
4LFA|1|A|A|792
4LFA|1|A|U|793
4LFA|1|A|A|794
4LFA|1|A|C|795
4LFA|1|A|C|796

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

ribosomal protein S11