3D structure

PDB id
4LSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.48 Å

Loop

Sequence
UUUACCAAAAA
Length
11 nucleotides
Bulged bases
4LSK|1|YA|A|1780, 4LSK|1|YA|C|1781, 4LSK|1|YA|C|1782, 4LSK|1|YA|A|1786
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4LSK_190 not in the Motif Atlas
Homologous match to HL_7RQB_045
Geometric discrepancy: 0.0925
The information below is about HL_7RQB_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_43613.5
Basepair signature
cWW-tWH-tWH-F
Number of instances in this motif group
6

Unit IDs

4LSK|1|YA|U|1777
4LSK|1|YA|U|1778
4LSK|1|YA|U|1779
4LSK|1|YA|A|1780
4LSK|1|YA|C|1781
4LSK|1|YA|C|1782
4LSK|1|YA|A|1783
4LSK|1|YA|A|1784
4LSK|1|YA|A|1785
4LSK|1|YA|A|1786
4LSK|1|YA|A|1787

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y7
50S ribosomal protein L34
Chain YD
50S ribosomal protein L2
Chain YW
50S ribosomal protein L22

Coloring options:


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