HL_4NYA_004

3D structure

PDB id

4NYA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amine

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GAUAAUGC

Length

8 nucleotides

Bulged bases

4NYA|1|B|G|72

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4NYA_004 not in the Motif Atlas

Homologous match to HL_7TZS_002

Geometric discrepancy: 0.0815

The information below is about HL_7TZS_002

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_67772.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

4NYA|1|B|G|66
4NYA|1|B|A|67
4NYA|1|B|U|68
4NYA|1|B|A|69
4NYA|1|B|A|70
4NYA|1|B|U|71
4NYA|1|B|G|72
4NYA|1|B|C|73

Current chains

Chain B

thiM TPP riboswitch

Nearby chains