4NYA Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4NYA_001 | 1/A/27:33 | No text annotation | homologous HL_7TZS_001 HL_46333.1 | |
| HL_4NYA_002 | 1/A/66:73 | T-loop related | homologous HL_7TZS_002 HL_67772.2 | |
| HL_4NYA_003 | 1/B/27:33 | No text annotation | homologous HL_7TZS_001 HL_46333.1 | |
| HL_4NYA_004 | 1/B/66:73 | T-loop related | homologous HL_7TZS_002 HL_67772.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4NYA_009 | 1/A/18:21, 1/A/38:48 | No text annotation | ||
| IL_4NYA_002 | 1/A/20:21, 1/A/38:45 | Stack outside cWW | homologous IL_7TZS_002 IL_38394.1 | |
| IL_4NYA_003 | 1/A/23:25, 1/A/35:36 | Minor groove platform related | homologous IL_7TZS_003 IL_34520.4 | |
| IL_4NYA_004 | 1/A/59:63, 1/A/76:80 | No text annotation | homologous IL_7TZS_004 NA | |
| IL_4NYA_005 | 1/B/18:20, 1/B/45:48 | Isolated non-canonical cWW pair | geometric IL_7TZS_001 IL_38565.3 | |
| IL_4NYA_010 | 1/B/18:21, 1/B/38:48 | No text annotation | homologous IL_7TZS_009 IL_44624.1 | |
| IL_4NYA_006 | 1/B/20:21, 1/B/38:45 | Stack outside cWW | homologous IL_7TZS_002 IL_38394.1 | |
| IL_4NYA_007 | 1/B/23:25, 1/B/35:36 | Minor groove platform related | homologous IL_7TZS_003 IL_34520.4 | |
| IL_4NYA_008 | 1/B/59:63, 1/B/76:80 | No text annotation | homologous IL_7TZS_004 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4NYA_001 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4NYA_002 | 1/A/14:15, 1/A/51:57, 1/A/82:85 | No text annotation | ||
| J3_4NYA_003 | 1/B/14:15, 1/B/51:57, 1/B/82:85 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4NYA_001 | No text annotation |
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