HL_4OX9_017

3D structure

PDB id

4OX9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the aminoglycoside resistance methyltransferase NpmA bound to the 30S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

4OX9|1|A|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4OX9_017 not in the Motif Atlas

Homologous match to HL_4LFB_017

Geometric discrepancy: 0.0602

The information below is about HL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4OX9|1|A|G|786
4OX9|1|A|A|787
4OX9|1|A|U|788
4OX9|1|A|U|789
4OX9|1|A|A|790
4OX9|1|A|G|791
4OX9|1|A|A|792
4OX9|1|A|U|793
4OX9|1|A|A|794
4OX9|1|A|C|795
4OX9|1|A|C|796

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

30S ribosomal protein S11

Chain Y

16S rRNA (adenine(1408)-N(1))-methyltransferase