HL_4P6F_061
3D structure
- PDB id
- 4P6F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the peptolide 12C bound to bacterial ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GGAUGCAAAC
- Length
- 10 nucleotides
- Bulged bases
- 4P6F|1|RA|U|747, 4P6F|1|RA|A|751, 4P6F|1|RA|A|752
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4P6F_061 not in the Motif Atlas
- Homologous match to HL_7RQB_023
- Geometric discrepancy: 0.101
- The information below is about HL_7RQB_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.6
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 6
Unit IDs
4P6F|1|RA|G|744
4P6F|1|RA|G|745
4P6F|1|RA|A|746
4P6F|1|RA|U|747
4P6F|1|RA|G|748
4P6F|1|RA|C|749
4P6F|1|RA|A|750
4P6F|1|RA|A|751
4P6F|1|RA|A|752
4P6F|1|RA|C|753
Current chains
- Chain RA
- 23S ribosomal RNA
Nearby chains
- Chain R5
- 50S ribosomal protein L32
- Chain R7
- 50S ribosomal protein L34
- Chain RE
- 50S ribosomal protein L3
- Chain RW
- 50S ribosomal protein L22
- Chain Z7
- T17-GLY-GLY-PRO-LYS-LYS-LYS-LYS-LYS-VAL-GLY-GLY
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