HL_4P6F_194
3D structure
- PDB id
- 4P6F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the peptolide 12C bound to bacterial ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- UUUACCAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 4P6F|1|YA|A|1780, 4P6F|1|YA|C|1781, 4P6F|1|YA|C|1782, 4P6F|1|YA|A|1786
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4P6F_194 not in the Motif Atlas
- Homologous match to HL_7RQB_045
- Geometric discrepancy: 0.085
- The information below is about HL_7RQB_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.5
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
4P6F|1|YA|U|1777
4P6F|1|YA|U|1778
4P6F|1|YA|U|1779
4P6F|1|YA|A|1780
4P6F|1|YA|C|1781
4P6F|1|YA|C|1782
4P6F|1|YA|A|1783
4P6F|1|YA|A|1784
4P6F|1|YA|A|1785
4P6F|1|YA|A|1786
4P6F|1|YA|A|1787
Current chains
- Chain YA
- 23S ribosomal RNA
Nearby chains
- Chain Y7
- 50S ribosomal protein L34
- Chain YD
- 50S ribosomal protein L2
- Chain Z8
- T17-GLY-GLY-PRO-LYS-LYS-LYS-LYS-LYS-VAL-GLY-GLY
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