Motif HL_98885.2 Version HL_98885.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4R0D_007 | 4R0D | 0.4534 | 2 | A | Group II catalytic intron | U | 253 | U | 256 | U | 257 | U | 258 | U | 259 | U | 260 | A | 261 | U | 262 | G | 263 | ncWW | |
| 2 | HL_1ZCI_002 | 1ZCI | 0.0000 | 2 | Pseudoknot geometry | B | RNA (23-mer) | G | 7 | G | 10 | U | 11 | G | 12 | C | 13 | A | 14 | C | 15 | A | 16 | C | 17 | cWW |
| 3 | HL_1ZCI_001 | 1ZCI | 0.0748 | 2 | Pseudoknot geometry | A | RNA (23-mer) | G | 7 | G | 10 | U | 11 | G | 12 | C | 13 | A | 14 | C | 15 | A | 16 | C | 17 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAGUGCACAC | 2 |
| UCCUUUUUAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGUGCACA | 2 |
| CCUUUUUAU | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Pseudoknot geometry (2)
- (1)
- Basepair signature
- cWW-R-R-R-R-R-R
- Heat map statistics
- Min 0.07 | Avg 0.22 | Max 0.47
Coloring options: