HL_4R0D_018

3D structure

PDB id

4R0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a eukaryotic group II intron lariat

Experimental method

X-RAY DIFFRACTION

Resolution

3.68 Å

Loop

Sequence

GAGAGAUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4R0D_018 not in the Motif Atlas

Geometric match to HL_8KAL_001

Geometric discrepancy: 0.3431

The information below is about HL_8KAL_001

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4R0D|1|A|G|599
4R0D|1|A|A|600
4R0D|1|A|G|601
4R0D|1|A|A|602
4R0D|1|A|G|603
4R0D|1|A|A|604
4R0D|1|A|U|605
4R0D|1|A|C|606

Current chains

Chain A

GROUP IIB INTRON LARIAT

Nearby chains