HL_4R4P_007

3D structure

PDB id

4R4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the VS ribozyme-A756G mutant

Experimental method

X-RAY DIFFRACTION

Resolution

3.07 Å

Loop

Sequence

GUUGACUAC

Length

9 nucleotides

Bulged bases

4R4P|1|A|U|695||||8_555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4R4P_007 not in the Motif Atlas

Geometric match to HL_4R4V_003

Geometric discrepancy: 0.153

The information below is about HL_4R4V_003

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

T-loop

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4R4P|1|A|G|689||||8_555
4R4P|1|A|U|690||||8_555
4R4P|1|A|U|691||||8_555
4R4P|1|A|G|692||||8_555
4R4P|1|A|A|693||||8_555
4R4P|1|A|C|694||||8_555
4R4P|1|A|U|695||||8_555
4R4P|1|A|A|696||||8_555
4R4P|1|A|C|697||||8_555

Current chains

Chain A

VS ribozyme RNA

Nearby chains