4R4P Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4R4P_001 | 1/A/626:634 | Anticodon loop related | geometric HL_4R4V_001 HL_81376.3 | |
| HL_4R4P_002 | 1/A/670:676 | No text annotation | geometric HL_4R4V_002 HL_10611.1 | |
| HL_4R4P_003 | 1/A/689:697 | GNRA with extra near cWW | geometric HL_4R4V_003 HL_87268.2 | |
| HL_4R4P_004 | 1/A/735:740 | GNRA | geometric HL_7RQB_064 NA | |
| HL_4R4P_005 | 1/A/626:634 | Anticodon loop related | geometric HL_4R4V_001 HL_81376.3 | |
| HL_4R4P_006 | 1/A/670:676 | No text annotation | geometric HL_4R4V_002 HL_10611.1 | |
| HL_4R4P_007 | 1/A/689:697 | GNRA with extra near cWW | geometric HL_4R4V_003 HL_87268.2 | |
| HL_4R4P_008 | 1/A/735:740 | GNRA | geometric HL_7RQB_064 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4R4P_009 | GNRA with extra near cWW | ||
| HL_4R4P_010 | GNRA with extra near cWW |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4R4P_002 | 1/A/619:623, 1/A/637:640 | No text annotation | geometric IL_4R4V_002 IL_63969.1 | |
| IL_4R4P_003 | 1/A/651:653, 1/A/766:767 | Single bulged A | geometric IL_4R4V_003 IL_14190.2 | |
| IL_4R4P_006 | 1/A/724:726, 1/A/749:753 | Isolated non-canonical cWW pair | geometric IL_4R4V_006 IL_19687.1 | |
| IL_4R4P_019 | 1/A/607:608, 1/A/777:779 | Single bulged U | geometric IL_5J7L_334 NA | |
| IL_4R4P_014 | 1/A/660:661, 1/A/712:714 | Single bulged A | geometric IL_2VPL_002 IL_14190.2 | |
| IL_4R4P_015 | 1/A/719:722, 1/A/755:756 | Intercalated cWS | geometric IL_4R4V_005 IL_16386.5 | |
| IL_4R4P_020 | 1/A/607:608, 1/A/777:779 | Single bulged U | geometric IL_5J7L_334 NA | |
| IL_4R4P_008 | 1/A/619:623, 1/A/637:640 | No text annotation | geometric IL_4R4V_002 IL_63969.1 | |
| IL_4R4P_009 | 1/A/651:653, 1/A/766:767 | Single bulged A | geometric IL_4R4V_003 IL_14190.2 | |
| IL_4R4P_017 | 1/A/660:661, 1/A/712:714 | Single bulged A | geometric IL_2VPL_002 IL_14190.2 | |
| IL_4R4P_018 | 1/A/719:722, 1/A/755:756 | Intercalated cWS | geometric IL_4R4V_005 IL_16386.5 | |
| IL_4R4P_012 | 1/A/724:726, 1/A/749:753 | Isolated non-canonical cWW pair | geometric IL_4R4V_006 IL_19687.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4R4P_001 | Isolated non-canonical cWW pair | ||
| IL_4R4P_013 | Isolated non-canonical cWW with bulges | ||
| IL_4R4P_004 | Isolated cWS basepair | ||
| IL_4R4P_005 | No text annotation | ||
| IL_4R4P_007 | Isolated non-canonical cWW pair | ||
| IL_4R4P_016 | Isolated non-canonical cWW with bulges | ||
| IL_4R4P_010 | Isolated cWS basepair | ||
| IL_4R4P_011 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4R4P_001 | 1/A/610:616, 1/A/643:646, 1/A/772:775 | No text annotation | geometric J3_4R4V_001 J3_89044.1 | |
| J3_4R4P_002 | 1/A/655:658, 1/A/716:717, 1/A/758:764 | No text annotation | geometric J3_4R4V_002 J3_51910.1 | |
| J3_4R4P_003 | 1/A/663:666, 1/A/680:683, 1/A/703:710 | No text annotation | geometric J3_4R4V_003 J3_98484.1 | |
| J3_4R4P_004 | 1/A/610:616, 1/A/643:646, 1/A/772:775 | No text annotation | geometric J3_4R4V_001 J3_89044.1 | |
| J3_4R4P_005 | 1/A/655:658, 1/A/716:717, 1/A/758:764 | No text annotation | geometric J3_4R4V_002 J3_51910.1 | |
| J3_4R4P_006 | 1/A/663:666, 1/A/680:683, 1/A/703:710 | No text annotation | geometric J3_4R4V_003 J3_98484.1 |
Problematic loops
No problematic loops
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