HL_4R4P_010

3D structure

PDB id

4R4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the VS ribozyme-A756G mutant

Experimental method

X-RAY DIFFRACTION

Resolution

3.07 Å

Loop

Sequence

GCGUAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4R4P_010 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.2068

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

4R4P|1|A|G|734||||8_555
4R4P|1|A|C|735||||8_555
4R4P|1|A|G|736||||8_555
4R4P|1|A|U|737||||8_555
4R4P|1|A|A|738||||8_555
4R4P|1|A|A|739||||8_555
4R4P|1|A|G|740||||8_555
4R4P|1|A|C|741||||8_555

Current chains

Chain A

VS ribozyme RNA

Nearby chains