HL_4TUB_067

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GCGUAAUAGC

Length

10 nucleotides

Bulged bases

4TUB|1|RA|A|1141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4TUB_067 not in the Motif Atlas

Homologous match to HL_5J7L_212

Geometric discrepancy: 0.5321

The information below is about HL_5J7L_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4TUB|1|RA|G|1137
4TUB|1|RA|C|1138
4TUB|1|RA|G|1139
4TUB|1|RA|U|1140
4TUB|1|RA|A|1141
4TUB|1|RA|A|1142
4TUB|1|RA|U|1143
4TUB|1|RA|A|1144
4TUB|1|RA|G|1145
4TUB|1|RA|C|1146

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6