HL_4TUB_099

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

4TUB|1|RA|G|2541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4TUB_099 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.1038

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

4TUB|1|RA|U|2540
4TUB|1|RA|G|2541
4TUB|1|RA|A|2542
4TUB|1|RA|A|2543
4TUB|1|RA|G|2544
4TUB|1|RA|A|2545
4TUB|1|RA|A|2546
4TUB|1|RA|G|2547

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6