3D structure

PDB id
4TUB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
GUAACUAUAAC
Length
11 nucleotides
Bulged bases
4TUB|1|YA|A|1913
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4TUB_195 not in the Motif Atlas
Geometric match to HL_5TBW_049
Geometric discrepancy: 0.1396
The information below is about HL_5TBW_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_84702.1
Basepair signature
cWW-F-F-tHW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4TUB|1|YA|G|1910
4TUB|1|YA|U|1911
4TUB|1|YA|A|1912
4TUB|1|YA|A|1913
4TUB|1|YA|C|1914
4TUB|1|YA|U|1915
4TUB|1|YA|A|1916
4TUB|1|YA|U|1917
4TUB|1|YA|A|1918
4TUB|1|YA|A|1919
4TUB|1|YA|C|1920

Current chains

Chain YA
23S rRNA

Nearby chains

Chain XA
Small subunit ribosomal RNA; SSU rRNA
Chain XV
Transfer RNA; tRNA
Chain XX
messenger RNA
Chain XY
A-site tRNA Thr

Coloring options:


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