HL_4TUD_103

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4TUD|1|RA|G|2751, 4TUD|1|RA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4TUD_103 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1294

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

4TUD|1|RA|C|2745
4TUD|1|RA|U|2746
4TUD|1|RA|G|2747
4TUD|1|RA|A|2748
4TUD|1|RA|A|2749
4TUD|1|RA|A|2750
4TUD|1|RA|G|2751
4TUD|1|RA|C|2752
4TUD|1|RA|A|2753
4TUD|1|RA|U|2754
4TUD|1|RA|C|2755
4TUD|1|RA|U|2756
4TUD|1|RA|A|2757
4TUD|1|RA|A|2758
4TUD|1|RA|G|2759

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6

Chain RN

50S ribosomal protein L13