HL_4U1V_140

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U1V_140 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.1242

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4U1V|1|DA|U|158
4U1V|1|DA|G|159
4U1V|1|DA|A|160
4U1V|1|DA|A|161
4U1V|1|DA|U|162
4U1V|1|DA|C|163
4U1V|1|DA|C|164
4U1V|1|DA|A|165
4U1V|1|DA|U|166
4U1V|1|DA|A|167
4U1V|1|DA|G|168

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DX

50S ribosomal protein L28