HL_4U24_132

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U24_132 not in the Motif Atlas

Homologous match to HL_6CZR_100

Geometric discrepancy: 0.2223

The information below is about HL_6CZR_100

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.2

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4U24|1|CA|C|1314
4U24|1|CA|U|1315
4U24|1|CA|G|1316
4U24|1|CA|C|1317
4U24|1|CA|A|1318
4U24|1|CA|A|1319
4U24|1|CA|C|1320
4U24|1|CA|U|1321
4U24|1|CA|C|1322
4U24|1|CA|G|1323

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CM

30S ribosomal protein S13

Chain CN

30S ribosomal protein S14

Chain CS

30S ribosomal protein S19