HL_4U25_025

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

4U25|1|AA|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U25_025 not in the Motif Atlas

Homologous match to HL_5J7L_024

Geometric discrepancy: 0.0844

The information below is about HL_5J7L_024

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4U25|1|AA|G|1089
4U25|1|AA|U|1090
4U25|1|AA|U|1091
4U25|1|AA|A|1092
4U25|1|AA|A|1093
4U25|1|AA|G|1094
4U25|1|AA|U|1095
4U25|1|AA|C|1096

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AG

30S ribosomal protein S7