HL_4U25_147

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

4U25|1|DA|G|386, 4U25|1|DA|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U25_147 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1491

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4U25|1|DA|A|382
4U25|1|DA|C|383
4U25|1|DA|A|384
4U25|1|DA|C|385
4U25|1|DA|G|386
4U25|1|DA|U|387
4U25|1|DA|G|388
4U25|1|DA|G|389
4U25|1|DA|U|390
4U25|1|DA|A|391
4U25|1|DA|U|392

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D3

50S ribosomal protein L35

Chain DX

50S ribosomal protein L28