HL_4U25_164

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U25_164 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.5699

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

4U25|1|DA|C|1092
4U25|1|DA|G|1093
4U25|1|DA|U|1094
4U25|1|DA|A|1095
4U25|1|DA|A|1096
4U25|1|DA|U|1097
4U25|1|DA|A|1098
4U25|1|DA|G|1099

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D4

50S ribosomal protein L36

Chain DG

50S ribosomal protein L6

Chain DI

50S ribosomal protein L11