HL_4U25_176

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

4U25|1|DA|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U25_176 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.1377

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4U25|1|DA|A|1630
4U25|1|DA|G|1631
4U25|1|DA|A|1632
4U25|1|DA|G|1633
4U25|1|DA|A|1634
4U25|1|DA|A|1635
4U25|1|DA|U|1636

Current chains

Chain DA

23S rRNA

Nearby chains