HL_4U27_037

3D structure

PDB id

4U27 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to flopristin and linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U27_037 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.0714

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4U27|1|BA|U|158
4U27|1|BA|G|159
4U27|1|BA|A|160
4U27|1|BA|A|161
4U27|1|BA|U|162
4U27|1|BA|C|163
4U27|1|BA|C|164
4U27|1|BA|A|165
4U27|1|BA|U|166
4U27|1|BA|A|167
4U27|1|BA|G|168

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BX

50S ribosomal protein L28